Bebop appeared as a boss in many of the Teenage Mutant Ninja Turtles video games, sometimes paired with Rocksteady as a double-boss. Even though Rocksteady was a boss in The Hyperstone Heist, Bebop was nowhere to be seen.
- In the first home-release game, Bebop is a mini-boss fought in the sewer. Rocksteady guards the captive April on a ledge above, while the player battles Bebop.
- The TMNT arcade game sees Bebop as the second boss, utilizing a ray gun, as well as charges and punches as attacks. In the arcade version, he returns with Rocksteady in the fourth stage.
- Teenage Mutant Ninja Turtles III: The Manhattan Project has Bebop as the third boss. This incarnation is slightly similar to his Head-Spinnin' Bebop action figure, complete with a ball and chain attached to his head.
- Bebop is a boss exclusive to the Super NES version of Teenage Mutant Ninja Turtles: Turtles in Time. He appears at the end of the game's sixth level, Skull & Crossbones, with Rocksteady. Both of them are decked out in stereotypical pirate regalia, and Bebop is brandishing a whip.
- Bebop appears as a boss in Teenage Mutant Ninja Turtles: The Manhattan Missions.
- Bebop is the second boss of Teenage Mutant Ninja Turtles: Fall of the Foot Clan. His attacks are much the same as in the arcade game.
- In Teenage Mutant Ninja Turtles II: Back from the Sewers, Bebop is again the second boss. His tactics include running, jumping, and firing a traditional gun.
- Bebop can be seen in the background of War's stage in the SNES version of Teenage Mutant Ninja Turtles: Tournament Fighters.
- The Russian PC version TMNT: Mutant Melee had stock art of Bebop on the cover. Bebop is not only not in the game, but is also not even in the universe in which the game takes place.